Publications
Selected studies from the lab and our collaborators, spanning immune–microbe interactions, immune repertoires and tissue biology.
4 studies
Preprints share work before peer review.
Zhou, Y., Canas, J., et al. bioRxiv (2026).
Human tissue profiling, spatial imaging and experimental models connect the local fibroblast environment to neutrophil behavior in ulcerative colitis.
Read preprint (opens in a new tab)Gubatan, J., et al. bioRxiv (2026).
A single-cell blood atlas links B- and T-cell receptor features to coordinated immune programs in inflammatory bowel disease, creating a resource for studying adaptive immune states.
Read preprint (opens in a new tab)Pavlović, M., Würtzen, C., et al. bioRxiv (2026).
Our collaborative immuneML work introduces reproducible workflows for discovering structure in adaptive immune receptor datasets, including clustering and generative modeling.
Read preprint (opens in a new tab)Gubatan, J., et al. Cell Reports Medicine · 7(4), 102703 (2026).
Our multi-omics study connects vitamin D treatment with changes in antibody-coated gut bacteria and immune pathways associated with tolerance in inflammatory bowel disease.
Read article (opens in a new tab)Open tools and study resources from our collaborative work.